species:   Cocin
pid:       PID1268
parent:    cci-milR-15
paralog:   a
locus:     scaffold_162:30991-31066
matures:   ['UUUCCCUGCGAGUGACAUG', 'UGCCACUCACAGAGAAAGG']
srr:       SRR9972089
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972089.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972089.cram scaffold_162:30991-31066

0 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

       **********************              ************************         
GCCGAUUCUUUCCCUGCGAGUGACAUGGUCGUUGACGAUGGCGAGCCCGUGCCACUCACAGAGAAAGGAUCAACGC
...(((((((((.(((.(((((.((((((((((......)))))..))))).))))).))).))))))))).....
--------UUUCCCUGCGAGUGACAUG------------------------------------------------- l=19 a=0 c
-------------------------------------------------UGCCACUCACAGAGAAAGG-------- l=19 a=0 c*
---------UUCCCUGCGAGUGACAUGGU----------------------------------------------- l=20 a=1 ma
---------------------------------------------CCCGUGCCACUCACAGAGAAAG--------- l=22 a=0 ma*

---------UUCCCUGCGAGUGACAUGGU----------------------------------------------- l=20 a=1 (ma)
--------UUUCCCUGCGAGUGACAUGG------------------------------------------------ l=20 a=1 

mb-01011
ax-1011111
ku-01
ss-110111111110
fn-111
